The almond, ['Prunus dulcis' (Mill) D.A. Webb syn. 'P. amygdalus' Batsch] is an important nut crop belonging to the family Rosaceae. Almond consumption has shown steady growth during the last decades due to the increased awareness of its excellent flavour, nutritional value and health benefits. The Australian climate provides great potential for growing almonds and the Australian almond breeding program was initiated in 1997 to develop cultivars better suited to growing conditions and to meet market demands. The construction of a genetic linkage map for one of the breeding populations (Nonpareil x Lauranne) was a part of this breeding program. This population comprised 181 individuals, of which 93 were used for map construction and quantitative trait loci (QTL) analysis in this study. Important traits that were investigated included flowering time, flower structures in relation to fruit set and autogamy and shell and kernel traits.

Macadamia ('Macadamia integrifolia' Maiden and Betche, 'M. tetraphylla' Johnson and hybrids) orchards in Australia are typically hedged around anthesis (September). Such hedging reduces yields, largely through competition for carbohydrates between early fruit set and the post-pruning vegetative flush, but also through a reduction in photosynthetic capacity caused by the loss of canopy. We examined whether hedging at other times might mitigate yield losses. Hedging time was found to affect yields across four cultivars: 'A4', 'A38', '344' and '816'. Yield losses were lower for trees hedged in November-December than for trees hedged in September. Yields for trees hedged in June were higher than for trees hedged in September in one experiment, but were similar in a second experiment. Yield losses for September and October hedging were similar. Hedging time changed the pattern of fluctuations in stem water-soluble carbohydrates (WSC). WSC declined shortly after hedging in September, October or November, and the declines preceded increases in fruit abscission relative to unpruned control trees. The increase in fruit abscission was less pronounced for the trees hedged in November, consistent with the idea that fruit become less sensitive to carbon limitation as they mature.

Developed recently, high resolution melting (HRM) analysis is an efficient, accurate and inexpensive method for distinguishing DNA polymorphisms. HRM has been used to identify mutations in human genes, and to detect SNPs, INDELs and microsatellites in plants. However, its capacity to discriminate DNA variants in the context of complex haplotypes involving INDEL as well as SNP variants has not been examined until now. In this study, we genotyped an almond (Prunus dulcis (Mill.) D. A. Webb, syn. Prunus amygdalus Batsch) pseudotestcross mapping population that showed segregation of complex haplotypes associated with CYP79D16 promoter sequence. The 175 bp region in question included a 7 bp INDEL and 3 SNPs, and manifested as three different haplotypes in the parents. Thus, with one homozygous and one heterozygous parent, two relevant genotypes were identified in the mapping population. Although the population displayed monomorphism with respect to the INDEL and one of the SNPs, HRM was sufficiently sensitive to distinguish genotypes on the basis of the two informative SNPs, and the resulting data were used to map CYP79D16 to linkage group 6 of the almond genome. Thus the capacity of HRM to resolve genotypes arising from complex haplotypes has been demonstrated, and this has important implications for the design of efficient HRM markers for various genetic applications including mapping, population studies and biodiversity analyses.

Yields of macadamia ('Macadamia integrifolia', 'M. tetraphylla', and hybrids) orchards tend to increase with increasing tree size up to ≈94% light interception. Beyond this, there is some indication that crowding leads to yield decline, but the evidence is limited to one site. Increasing tree size and orchard crowding also present numerous management problems, including soil erosion, harvest delays, and increased pest and disease pressure. The aim of this study was to better characterize long-term yield trends in mature orchards and to assess the effects of manual and mechanical pruning strategies on yield, nut characteristics, tree size, and economics. We monitored yield at four sites in mature '344' and '246' orchards for up to seven years and confirmed a decline in yield with crowding for three of the sites. There was a small increase in yield over time at the fourth site, which may reflect the lower initial level of crowding and shorter monitoring period compared with the other sites, and highlights the need for long-term records to establish yield trends. Pruning to remove several large limbs from '246' trees to improve light penetration into the canopy increased yield relative to control trees but the effect was short-lived and not cost-effective. Removal of a codominant leader from '344' trees reduced yield by 21%. Annual side-hedging of '246' trees reduced yield by 12% and mechanical topping of '344' trees caused a substantial reduction in yield of up to 50%. Removal of limbs in the upper canopy to reduce the height of '344' trees had less effect on yield than topping but re-pruning was not practical because of the extensive regrowth around the pruning cuts. Tree size control is necessary for efficient orchard management, but in this study, pruning strategies that controlled tree size also reduced yield. Research into the physiological response to pruning in macadamia is required to improve outcomes.

Macadamia ('Macadamia integrifolia', 'M. tetraphylla', and hybrids) is an evergreen, subtropical, recurrent flushing tree that is native to subtropical eastern Australia. Macadamia is induced to flower by cool temperatures, but cool temperatures do not ensure flowering because there are important interactions with vegetative growth. Interactions between the vegetative growth, flowering and yield of macadamia were investigated with the aim of developing canopy management strategies. Characteristics of the stems were found to affect the likelihood of flowering, with short stems being more likely to flower than long stems. The stem age most likely to flower, 1- or 2-year-old, depended on cultivar. Overall this indicated that floral behaviour of a stem was influenced by its physiological position within the canopy.

In Australian macadamia ('Macadamia integrifolia' Maiden and Betche, 'M. tetraphylla Johnson' and hybrids) orchards, trees are generally side-hedged in early spring to maintain the inter-row for efficient orchard management. Hedging at this time increases fruit abscission and decreases yield due to competition for carbohydrates between fruit and post-pruning shoot growth, and to the loss of photosynthetic area. Girdling increases fruit set in many crops and the possibility that girdling might mitigate the effect of pruning on fruit abscission and yield was investigated in this study. Girdling was also investigated for its potential to control shoot growth and tree size. In the first experiment, in early spring around anthesis, trees were pruned (P), pruned and girdled (PG), or were left as unpruned and ungirdled control trees. Fruit per raceme over time, percent of racemes with fruit at 20 weeks post anthesis, fruit number per tree, nut weight, yield, and the shoot length and number of the post-pruning flush were measured. In a second experiment, trees were pruned (P) or pruned and girdled (PG) in autumn, and the shoot length and number of the post-pruning flush were measured. In a third experiment, trees were girdled at anthesis in 3 years over a 4-year period and shoot growth, tree height, yield, fruit number and nut weight were compared with ungirdled control trees. Girdling mitigated the effect of pruning on fruit abscission and yield but the mitigation was slight with PG trees producing 28% less yield than unpruned control trees. Girdling reduced shoot length and number but more so on unpruned branches (26% and 28%, respectively) than on pruned branches (10% and 14%, respectively). The tree height increment in girdled trees was around half that of ungirdled trees. In the 4-year study, girdling increased yield by around 10% in two out of four seasons, and decreased it in one season. Cumulative yields were similar for girdled and ungirdled trees. This study has shown that girdling was not useful in mitigating the effect of pruning on yield. However girdling was effective in controlling shoot growth and tree size, with no reduction in cumulative yield, and may be useful as a tree size control strategy. Further monitoring of long-term effects of repeat girdling is required to confirm this.

Background: Despite a high genetic similarity to peach, almonds ('Prunus dulcis') have a fleshless fruit and edible kernel, produced as a crop for human consumption. While the release of peach genome v1.0 provides an excellent opportunity for almond genetic and genomic studies, well-assessed segregating populations and the respective saturated genetic linkage maps lay the foundation for such studies to be completed in almond. Results: Using an almond intraspecific cross between 'Nonpareil' and 'Lauranne' (N × L), we constructed a moderately saturated map with SSRs, SNPs, ISSRs and RAPDs. The N × L map covered 591.4 cM of the genome with 157 loci. The average marker distance of the map was 4.0 cM. The map displayed high synteny and colinearity with the 'Prunus' T × E reference map in all eight linkage groups (G1-G8). The positions of 14 mapped gene-anchored SNPs corresponded approximately with the positions of homologous sequences in the peach genome v1.0. Analysis of Mendelian segregation ratios showed that 17.9% of markers had significantly skewed genotype ratios at the level of P < 0.05. Due to the large number of skewed markers in the linkage group 7, the potential existence of deleterious gene(s) was assessed in the group. Integrated maps produced by two different mapping methods using JoinMap® 3 were compared, and their high degree of similarity was evident despite the positional inconsistency of a few markers. Conclusions: We presented a moderately saturated Australian almond map, which is highly syntenic and collinear with the 'Prunus' reference map and peach genome V1.0. Therefore, the well-assessed almond population reported here can be used to investigate the traits of interest under Australian growing conditions, and provides more information on the almond genome for the international community.

Macadamia is a subtropical, evergreen tree which flowers in response to cool temperature, producing racemes that originate from axillary buds. The physiology of macadamia flowering, including some new data, and applications to canopy management are discussed. Floral initiation is also reliant on axillary bud release, which is affected by the timing of vegetative growth and characteristics of the stems. Other endogenous signals, including signals from the fruit, may also be involved. The most common form of canopy management in Australian macadamia orchards is mechanical hedging. Well timed autumn hedging or hedging in early winter would ensure the absence of immature vegetative flush that has the potential to suppress flowering. The relationship between flowering and yield in macadamia is largely unknown, so increasing flowering may not necessarily increase yield as with some other subtropical and tropical tree crops.

Paternity analysis was used to assess the self-incompatibility of the olive ('Olea europaea' L.) cultivar 'Kalamata' and to identify some compatible pollenisers under a Mediterranean-type climate. Eight microsatellite markers were used for genotyping three 'Kalamata' mother trees, 120 embryos, and all potential pollen donors. The identified alleles were analysed using FaMoz software and showed that 'Kalamata' was highly self-incompatible. Only three 'Kalamata' embryos were assigned to 'Kalamata' self-fertilisation, even though it was the most available pollen donor. The alleles were also analysed using NTSYS-pc (version 2.02 k) software and identified 54 potential pollen donors in the study site; however, not all of them were located within the effective pollination distance of the mother trees (30 m in olive). According to the results of this study, 'Kalamata' (as a host) was compatible with 'Barnea', 'Benito', and 'Katsourela' (six 'Kalamata' embryos assigned in each) but incompatible with 'Arbequina', 'Azapa', and 'Picual' (zero 'Kalamata' embryos assigned in each). The olive growers could use some of these compatible pollenisers with 'Kalamata' to guarantee good fruit set.

Background and Aims: There is good evidence for deciduous trees that competition for carbohydrates from shoot growth accentuates early fruit abscission and reduces yield but the effect for evergreen trees is not well defined. Here, whole-tree tip-pruning at anthesis is used to examine the effect of post-pruning shoot development on fruit abscission in the evergreen subtropical tree macadamia ('Macadamia integrifolia', 'M. integrifolia' x 'tetraphylla'). Partial-tree tip-pruning is also used to test the localization of the effect. Methods: In the first experiment (2005/2006), all branches on trees were tip-pruned at anthesis, some trees were allowed to re-shoot (R treatment) and shoots were removed from others (NR treatment). Fruit set and stem total non-structural carbohydrates (TNSC) over time, and yield were measured. In the second experiment (2006/2007), upper branches of trees were tip-pruned at anthesis, some trees were allowed to re-shoot (R) and shoots were removed from others (NR). Fruit set and yield were measured separately for upper (pruned) and lower (unpruned) branches. Key Results: In the first experiment, R trees set far fewer fruit and had lower yield than NR trees. TNSC fell and rose in all treatments but the decline in R trees occurred earlier than in NR trees and coincided with early shoot growth and the increase in fruit abscission relative to the other treatments. In the second experiment, fruit abscission on upper branches of R trees increased relative to the other treatments but there was little difference in fruit abscission between treatments on lower branches. Conclusions: This study is the first to demonstrate an increase in fruit abscission in an evergreen tree in response to pruning. The effect appeared to be related to competition for carbohydrates between post-pruning shoot growth and fruit development and was local, with shoot growth on pruned branches having no effect on fruit abscission on unpruned branches.