Aggregates play a key role in protecting soil organic carbon (SOC) from microbial decomposition. The objectives of this study were to investigate the influence of pore geometry on the organic carbon decomposition rate and bacterial diversity in both macro- (250-2000 μm) and micro-aggregates (53-250 μm) using field samples. Four sites of contrasting land use on Alfisols (i.e. native pasture, crop/pasture rotation, woodland) were investigated. 3D Pore geometry of the micro-aggregates and macro-aggregates were examined by X-ray computed tomography (μCT). The occluded particulate organic carbon (oPOC) of aggregates was measured by size and density fractionation methods. Microaggregates had 54% less μCT observed porosity but 64% more oPOC compared with macro-aggregates. In addition, the pore connectivity in micro-aggregates was lower than macro-aggregates. Despite both lower μCT observed porosity and pore connectivity in micro-aggregates, the organic carbon decomposition rate constant (Ksoc) was similar in both aggregate size ranges. Structural equation modelling showed a strong positive relationship of the concentration of oPOC with bacterial diversity in aggregates. We use these findings to propose a conceptual model that illustrates the dynamic links between substrate, bacterial diversity, and pore geometry that suggests a structural explanation for differences in bacterial diversity across aggregate sizes.

Soil carbon (C) saturation implies an upper limit to a soil's capacity to store C depending on the contents of silt + clay and poorly crystalline Fe and Al oxides. We hypothesized that the poorly crystalline Fe and Al oxides in silt + clay fraction increased the C saturation and thus reduced the capacity of the soil to sorb additional C input. To test the hypothesis, we studied the sorption of dissolved organic carbon (DOC) on silt + clay fractions (<53 µm) of highly weathered oxic soils, collected from three different land uses (i.e., improved pasture, cropping and forest). Soils with high carbon saturation desorbed 38% more C than soils with low C saturation upon addition of DOC, whereas adsorption of DOC was only observed at higher concentration (>15 g kg−1). While high Al oxide concentration significantly increased both the saturation and desorption of DOC, the high Fe oxide concentration significantly increased the desorption of DOC, supporting the proposition that both oxides have influence on the DOC sorption in soil. Our findings provide a new insight into the chemical control of stabilization and destabilization of DOC in soil.

Understanding the changes in soil organic matter (SOM) composition during aggregate formation is crucial to explain the stabilization of SOM in aggregates. The objectives of this study were to investigate (i) the composition of SOM associated with different aggregates and size-density fractions and (ii) the role of selective preservation in determining the composition of organic matter in aggregate and size-density fractions. Surface soil samples were collected from an Alfisol on the Northern Tablelands of NSW, Australia, with contrasting land uses of native pasture, crop-pasture rotation and woodland. Solid-state 13C cross-polarization and magic angle spinning (CPMAS) nuclear magnetic resonance (NMR) spectroscopy was used to determine the SOM composition in macroaggregates (250-2000 μm), microaggregates (53-250 μm), and <53-μm fraction. The chemical composition of light fraction (LF), coarse particulate organic matter (cPOM), fine particulate organic matter (fPOM), and mineral-associated soil organic matter (mSOM) were also determined. The major constituent of SOM of aggregate size fractions was O-alkyl carbon, which represented 44-57% of the total signal acquired, whereas alkyl carbon contributed 16-27%. There was a progressive increase in alkyl carbon content with decrease in aggregate size. Results suggest that SOM associated with the <53-μm fraction was at a more advanced stage of decomposition than that of macroaggregates and microaggregates. The LF and cPOM were dominated by O-alkyl carbon while alkyl carbon content was high in fPOM and mSOM. Interestingly, the relative change in O-alkyl, alkyl, and aromatic carbon between aggregates and SOM fractions revealed that microbial synthesis and decomposition of organic matter along with selective preservation of alkyl and aromatic carbon play significant roles in determining the composition of organic matter in aggregates.

Measuring soil organic carbon (SOC) mineralization in macro-aggregates (250-2000 μm), micro-aggregates (250-53 μm) and the < 53 μm fraction helps to understand how spatial separation of SOC inside soil aggregates regulates its dynamics. We hypothesized that (i) compared with macro-aggregates SOC mineralization rate of micro-aggregates would be slower, (ii) adsorption of SOC on < 53 μm fraction decreases the SOC mineralization rate, and (iii) land use has a significant influence on SOC decomposition rate. To test these hypotheses we collected topsoil from Dermosol (Acrisols in FAO Soil Classification) sites under three contrasting land uses namely native pasture (NP), crop-pasture rotation (CP) and woodland (WL).

The conventional model of aggregate formation suggests a hierarchy where micro-aggregates with lower porosity and therefore reduced soil organic carbon (SOC) mineralization form inside macro-aggregates. This model has however been questioned for highly weathered Oxisols where inconclusive results regarding the presence of aggregate hierarchy have been obtained to date. We hypothesized that in Oxisols (i) an aggregate hierarchy would be present (ii) the porosity of micro-aggregates would be lower than that of macro-aggregates and (iii) pore geometry of aggregates would influence SOC mineralization. We collected topsoils from Oxisols in northern New South Wales, Australia from which macro-aggregates (>250 μm), micro-aggregates (53-250 μm) and <53 μm fractions were isolated from bulk soil by wet sieving. 3D images of macro- and micro-aggregates were produced using X-ray computed tomography (μCT) showing the presence of micro-aggregates inside macro-aggregates, which confirmed the presence of an aggregate hierarchy in the Oxisols studied. Macro-aggregates were more common and SOC in higher concentrations in forest systems compared with agricultural (the cultivation or pasture) land-uses, but aggregate geometry differed little between the land-uses studied. The porosity of macro-aggregates (4%) was significantly lower than micro-aggregates (5.5%). Despite the differences in pore geometry between macro- and micro-aggregates, SOC mineralized (SOC'min') during a 2-month incubation (at 25°C) was similar in macro- (3% of SOC concentration) and micro-aggregates (2.8% of SOC concentration). We conclude that although aggregate hierarchy exists in these soils and that aggregate geometry did differ between aggregate size classes, there was no evidence to support the porosity exclusion principle and the assumption that SOC is preferentially stabilized within micro-aggregates in these soils.

Radiocarbon is a useful tool for studying carbon dynamics in soil aggregates. The objective of the current study was to determine the mean residence time (MRT) of soil organic carbon (SOC) in macroaggregates and microaggregates under contrasting land uses. Contrasting land uses investigated at Alfisol (equivalent to Dermosol in Australian Soil Classification) sites were native pasture (NP), crop-pasture rotation (CP), and Eucalypt woodland (WL), whereas in Oxisol (Ferrosol in Australian Soil Classification) sites, land uses comprised improved pasture (IP), cropping (CR), and forest (FR). Soil aggregates were separated into macroaggregates (250-2000 μm) and microaggregates (53-250 μm) by wet-sieving, and their 14C signatures were determined by accelerator mass spectrometry (AMS). The 14C activity in both macro- and microaggregates was >100 pMC, indicating the presence of post-bomb carbon in the soil. The mean residence time (MRT) of SOC in macro- and microaggregates (MRTagg) was on average 68 yr longer in the Oxisol compared with that in the Alfisol. The MRTagg in microaggregates was 10 yr longer than that of macroaggregates in the Alfisol. However, the MRTagg in microaggregates was 50 yr shorter compared to macroaggregates in the Oxisol. The MRT of macro- and microaggregates can be separated into active, slow, and stable SOC pools. Among the 3 SOC pools, the MRT of the stable pool is of higher significance in terms of SOC stabilization in soil aggregates because of its longer MRT. However, isolation and direct MRT estimation of the stable SOC pool is difficult. The MRT of active and slow SOC pools associated with macro- and microaggregates was measured using a SOC mineralization experiment to estimate the MRT of the stable SOC pool under contrasting land uses by applying a mass balance criterion. The MRT of active (MRTA) and slow (MRTS) SOC pools in macro- and microaggregates varied between 1-50 days and 13-38 yr, respectively. The estimated MRT of the stable pool carbon (MRTP) in microaggregates was 897 yr longer compared to that of macroaggregates in the Alfisol. However, in the Oxisol, MRTP in microaggregates was 568 yr shorter than that of macroaggregates. Among the land uses, WL in Alfisol and CR in Oxisol had longer MRTagg and MRTP compared to other land uses.

Microaggregates play a key role to protect soil organic matter (SOM) from microbial decomposition. Several physical, physico-chemical and biochemical mechanisms have been proposed to describe the SOM stabilization in soil. However, no scientific consensus exists about a range of hypotheses. The aim of this review is to consolidate common notions and hypotheses on physical and physico-chemical protection mechanisms. The key notion of physical protection is exclusion of microbes and enzymes from microaggregate pores. Recent investigations showed higher microbial diversity and presence of accessible pore networks in microaggregates. The physico-chemical protection mechanism is more robust but monolayer or patchy adsorption of SOM onto clay surfaces requires further detailed research. The adsorption of SOM and exo-enzymes on pore walls and clay surfaces has been identified as a plausible concept of SOM stabilization.