Key morphological traits reveal changes in functional morphospace occupation of reef fish assemblages over time. We used measurements of key functional attributes (i.e., lower jaw length and orbit diameter) of 208 fossil fish species from five geological periods to create bivariate plots of functional morphological traits through time. These plots were used to examine possible function and ecological characteristics of fossil reef fish assemblages throughout the Mesozoic and Cenozoic. A previously unknown trend of increasing orbit diameter over time became apparent. The Teleostei are the principal drivers of this change. The Eocene appears to mark a dramatic increase in two previously rare feeding modes in fishes: nocturnal feeding and high-precision benthic feeding. Interestingly, members of the Pycnodontiformes had relatively large eyes since the Triassic and appear to be the ecological precursors of their later teleost counterparts and may have been among the earliest nocturnal feeding fishes. Our results highlight potential changes in the roles of fishes on coral reefs through time.

Elevated sediment loads in the epilithic algal matrix (EAM) deter grazing by herbivorous fishes and may compromise their critical roles on coral reefs. However, the properties of sediments that drive herbivore deterrence are unknown. Binary choice trials in aquaria were used to examine the effects of three sediment attributes-sediment source, grain size and organic load-on grazing by the abundant inner-shelf parrotfish, Scarus rivulatus. Fish were presented with a choice between EAM-covered rocks treated with (a) terrigenous or reefal sediments, (b) fine or coarse sediments or (c) sediments with high or low organic loads. Scarus rivulatus did not show a preference for sediments from different sources (terrigenous vs. reefal); however, a clear preference was evident for fine-grained sediments over coarse (109 % more bites) and sediments with high organic loads over low (147 % more bites). The avoidance of coarse sediments is likely to be a key factor driving the inhibition of grazing on mid-shelf reefs, which are dominated by coarse sediments. In contrast, on innershelf reefs, grazing by parrotfishes may be deterred primarily by high sediment loads, which reduce the proportional organic content in EAM sediments. Our study highlights the potential impact of sediments on critical ecological processes and the threats posed by changing sediment loads on inner-shelf reefs.

Onshore to offshore gradients in marine assemblages have been well documented on coral reefs, with most studies showing a distinct separation between onshore and offshore locations. Here we use enclosed anaesthetic sampling of small, cryptobenthic reef fishes to assess changes in assemblage composition across the Great Barrier Reef continental shelf. The cryptobenthic fishes exhibited fine-scale partitioning across the shelf. Three dominant species of goby accounted for over 55% of all fishes collected, with 1 species characterising each of the 3 key shelf positions: inner-, mid- and outer-shelf. Multivariate analyses of assemblage composition revealed further separation of reefs within the inner- and mid-shelf positions, highlighting the exceptional sensitivity of cryptobenthic reef fish assemblages to shelf position, with a progressive separation of individual reef assemblages with distance from the shore. These among-reef patterns contrast markedly with other reef fish taxa which invariably show 2 broad assemblages across the continental shelf (inner- vs. a composite mid- and outer-shelf community). As a result of this exceptional sensitivity to environmental conditions, cryptobenthic reef fish communities may represent good subjects for high-resolution monitoring of disturbances on coral reefs.

Interactions between fishes and the benthos have shaped the development of marine ecosystems since at least the early Mesozoic. Here, using the morphology of fish teeth as an indicator of feeding abilities, we quantify changes over the last 240 million years of reef fish evolution. Fossil and extant coral reef fish assemblages reveal exceptional stasis in tooth design over time, with one notable exception, a distinct long-toothed form. Arising only in the last 40 million years, these long-toothed fishes have bypassed the invertebrate link in the food chain, feeding directly on benthic particulate material. With the appearance of elongated teeth, these specialized detritivores have moved from eating invertebrates to eating the food of invertebrates. Over evolutionary time, fishes have slid back down the food chain.

The behaviour of juvenile fishes is critical in establishing the link between recruitment and subsequent adult populations. If juvenile fishes move, they can respond to variation in local conditions before adult home ranges are established. Alternatively, if juveniles establish fixed home ranges at settlement, their decisions may determine future population densities at small spatial scales. Field observations and translocations revealed that juvenile rabbitfishes ('Siganus corallinus' and 'S. doliatus') have small home ranges and strong homing abilities (covering 6 m in 1 h or 36 m within 24 h). Only four of 22 individuals failed to return; all were transferred up-current, suggesting that olfaction is important in homing. Small home ranges and strong homing tendencies in juvenile herbivores suggest that decisions made by recruits will impact the spatial extent of both adult fishes and the functional roles they play within ecosystems.

Sediments are a ubiquitous feature of all coral reefs, yet our understanding of how they affect complex ecological processes on coral reefs is limited. Sediment in algal turfs has been shown to suppress herbivory by coral reef fishes on high-sediment, low-herbivory reef flats. Here, we investigate the role of sediment in suppressing herbivory across a depth gradient (reef base, crest and flat) by observing fish feeding following benthic sediment reductions. We found that sediment suppresses herbivory across all reef zones. Even slight reductions on the reef crest, which has 35 times less sediment than the reef flat, resulted in over 1800 more herbivore bites (h̄¹ m̄²). The Acanthuridae (surgeonfishes) were responsible for over 80 per cent of all bites observed, and on the reef crest and flat took over 1500 more bites (h̄¹ m̄²) when sediment load was reduced. These findings highlight the role of natural sediment loads in shaping coral reef herbivory and suggest that changes in benthic sediment loads could directly impair reef resilience.

The concept of home ranges is fundamental to ecology. Numerous studies have quantified how home ranges scale with body size across taxa. However, these relationships are not always applicable intraspecifically. Here, we describe how the home range of an important group of reef fish, the parrotfishes, scales with body mass. With masses spanning five orders of magnitude, from the early postsettlement stage through to adulthood, we find no evidence of a response to predation risk, dietary shifts or sex change on home range expansion rates. Instead, we document a distinct ontogenetic shift in home range expansion with sexual maturity. Juvenile parrotfishes displayed rapid home range growth until reaching approximately 100-150 mm length. Thereafter, the relationship between home range and mass broke down. This shift reflected changes in colour patterns, social status and reproductive behaviour associated with the transition to adult stages. While there is a clear relationship between body mass and home ranges among adult individuals of different species, it does not appear to be applicable to size changes within species. Ontogenetic changes in parrotfishes do not follow expected mass-area scaling relationships.

Sediments are widely accepted as a threat to coral reefs but our understanding of their ecological impacts is limited. Evidence has suggested that benthic sediments bound within the epilithic algal matrix (EAM) suppress reef fish herbivory, a key ecological process maintaining reef resilience. An experimental combination of caging and sediment addition treatments were used to investigate the effects of sediment pulses on herbivory and EAMs and to determine whether sediment addition could trigger a positive-feedback loop, leading to deep, sediment-rich turfs. A 1-week pulsed sediment addition resulted in rapid increases in algal turf length with effects comparable to those seen in herbivore exclusion cages. Contrary to the hypothesised positive-feedback mechanism, benthic sediment loads returned to natural levels within 3 weeks, however, the EAM turfs remained almost 60% longer for at least 3 months. While reduced herbivore density is widely understood to be a major threat to reefs, we show that acute disturbances to reef sediments elicit similar ecological responses in the EAM. With reefs increasingly threatened by both reductions in herbivore biomass and altered sediment fluxes, the development of longer turfs may become more common on coral reefs.

Around the world, the decreasing health of coral reef ecosystems has highlighted the need to better understand the processes of reef degradation. The development of more sensitive tools, which complement traditional methods of monitoring coral reefs, may reveal earlier signs of degradation and provide an opportunity for pre-emptive responses. We identify new, sensitive metrics of ecosystem processes and benthic composition that allow us to quantify subtle, yet destabilizing, changes in the ecosystem state of an inshore coral reef on the Great Barrier Reef. Following severe climatic disturbances over the period 2011-2012, the herbivorous reef fish community of the reef did not change in terms of biomass or functional groups present. However, fish-based ecosystem processes showed marked changes, with grazing by herbivorous fishes declining by over 90%. On the benthos, algal turf lengths in the epilithic algal matrix increased more than 50% while benthic sediment loads increased 37-fold. The profound changes in processes, despite no visible change in ecosystem state, i.e., no shift to macroalgal dominance, suggest that although the reef has not undergone a visible regime-shift, the ecosystem is highly unstable, and may sit on an ecological knife-edge. Sensitive, process-based metrics of ecosystem state, such as grazing or browsing rates thus appear to be effective in detecting subtle signs of degradation and may be critical in identifying ecosystems at risk for the future.

Sediments are found in the epilithic algal matrix (EAM) of all coral reefs and play important roles in ecological processes. Although we have some understanding of patterns of EAM sediments across individual reefs, our knowledge of patterns across broader spatial scales is limited. We used an underwater vacuum sampler to quantify patterns in two of the most ecologically relevant factors of EAM sediments across the Great Barrier Reef: total load and grain size distribution. We compare these patterns with rates of sediment production and reworking by parrotfishes to gain insights into the potential contribution of parrotfishes to EAM sediments. Inner-shelf reef EAMs had the highest sediment loads with a mean of 864.1 g m⁻², compared to 126.8 g m⁻² and 287.4 g m⁻² on mid- and outer-shelf reefs, respectively. High sediment loads were expected on inner-shelf reefs due to their proximity to the mainland, however, terrigenous siliceous sediments only accounted for 13-24% of total mass. On inner-shelf reef crests parrotfishes would take three months to produce the equivalent mass of sediment found in the EAM. On the outer-shelf it would take just three days, suggesting that inner-shelf EAMs are characterised by low rates of sediment turnover. By contrast, on-reef sediment production by parrotfishes is high on outer-shelf crests. However, exposure to oceanic swells means that much of this production is likely to be lost. Hydrodynamic activity also appears to structure sediment patterns at within-reef scales, with coarser sediments (> 250 µm) typifying exposed reef crest EAMs, and finer sediments (< 250 µm) typifying sheltered back-reef EAMs. As both the load and grain size of EAM sediments mediate a number of important ecological processes on coral reefs, the observed sediment gradients are likely to play a key role in the structure and function of the associated coral reef communities.