Brief pulses of intense magmatic activity (flare-ups) along convergent margins represent drivers for climatic excursions that can lead to major extinction events. However, correlating volcanic outpouring to environmental crises in the geological past is often difficult due to poor preservation of volcanic sequences. Herein, we present a high-fidelity, CA-TIMS U–Pb zircon record of an end-Permian flare-up event in Eastern Australia, that involved the eruption of >39,000–150,000 km3 of silicic magma in c. 4.21 million years. A correlated high-resolution tephra record (c. 260–249 Ma) in the proximal sedimentary basins suggests recurrence of eruptions from the volcanic field in intervals of ~51,000–145,000 years. Peak eruption activity at 253 Ma is chronologically associated with the pulsed stages of the Permian mass extinction event. The ferocity of the 253 Ma eruption cycle in Eastern Australia is identified as a driver of greenhouse crises and ecosystem stress that led to the reduction in diversity of genera and the demise of the Glossopteris Forests. Simultaneous global continental margin arc flare-up events could thus present an additional agent to trigger greenhouse warming and ecosystem stress that preceded the catastrophic eruption of the Siberian Traps.