2016, Zhang, Yi, Lu, Yongfang, Cuong, Vu Chi, Pham, Lan Doan, Bouahom, Bounthong, Yang, Bingzhuang, Liang, Xianwei, Cai, Zhihua, Vankan, Dianne, Manatchaiworakul, Wallaya, Kowlim, Nonglid, Duangchantrasiri, Somphot, Yindee, Marnoch, Wajjwalku, Worawidh, Colenbrander, Ben, Zhang, Yuan, Beerli, Peter, Lenstra, Johannes A, Barker, J Stuart F, Li, Kuan-Yi, Kuo, Hsiao-Yun, Ju, Yu-Ten, Ye, Shaohui, Faruque, Md Omar, Li, Qiang, Wang, Yachun

The swamp type of the Asian water buffalo is assumed to have been domesticated by about 4000 years BP, following the introduction of rice cultivation. Previous localizations of the domestication site were based on mitochondrial DNA (mtDNA) variation within China, accounting only for the maternal lineage. We carried out a comprehensive sampling of China, Taiwan, Vietnam, Laos, Thailand, Nepal and Bangladesh and sequenced the mtDNA 'Cytochrome b' gene and control region and the Y-chromosomal ZFY, SRY and DBY sequences. Swamp buffalo has a higher diversity of both maternal and paternal lineages than river buffalo, with also a remarkable contrast between a weak phylogeographic structure of river buffalo and a strong geographic differentiation of swamp buffalo. The highest diversity of the swamp buffalo maternal lineages was found in south China and north Indochina on both banks of the Mekong River, while the highest diversity in paternal lineages was in the China/Indochina border region. We propose that domestication in this region was later followed by introgressive capture of wild cows west of the Mekong. Migration to the north followed the Yangtze valley as well as a more eastern route, but also involved translocations of both cows and bulls over large distances with a minor influence of river buffaloes in recent decades. Bayesian analyses of various migration models also supported domestication in the China/Indochina border region. Coalescence analysis yielded consistent estimates for the expansion of the major swamp buffalo haplogroups with a credibility interval of 900 to 3900 years BP. The spatial differentiation of mtDNA and Y-chromosomal haplotype distributions indicates a lack of gene flow between established populations that is unprecedented in livestock.

2014, Barker, James S F

The genus 'Bubalus' was widely distributed in Europe and southern Asia in the Pleistocene, but later was restricted to the Indian subcontinent and southeast Asia (Mason 1974.) In historical times, the wild Asian buffalo ('Bubalus arnee', Kerr 1792) ranged across south and southeast Asia from Mesopotamia to Indo-China. It is currently listed as endangered, with a world population fewer than 4,000, potentially fewer than 200, and it is even possible that no purebred wild animals exist.

2013, Barker, James Stuart F

'Drosophila buzzatii' Patterson & Wheeler, a cactophilic species that feeds and breeds in the rotting tissues of various 'Opuntia' cactus species, was inadvertently introduced to Australia from Argentina sometime during the period 1931-1936. After a bottleneck at introduction, its spread through the cactus distribution was probably very rapid as a result of natural dispersal from the site of introduction and from three other foci colonized from the introduction site by human intervention. By 1940, the Opuntia distribution and consequently that of 'D.  buzzatii' was reduced to spatially isolated populations, with probable further bottlenecking of at least some of the 'D.  buzzatii' populations. Allozyme data (primarily six polymorphic loci) from flies collected during April 1972 to February 1996 at 67 localities were used to examine current population differentiation and relationships, as well as to infer aspects of their demographic history. Although there is significant isolation-by-distance, genetic relationships among the populations are not simply related to geographical distance, implying that genetic drift has contributed to population differentiation. However, the biotic and, to an extent, the physical environment are not the same in Australia as in Argentina. Consequently, exposure to novel environments has led to local adaptation and further population differentiation. Genetic variation and the structure of Australian populations apparently are determined by founder effects (drift) at the level of individual breeding sites (cactus rots), by diversifying selection among rots within a locality, as well as by drift and geographically varying selection among localities.