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Title
A Simple Method for Evaluating the Genotype Quality of the Sire X Chromosome Using Half‑Sib Families
Fields of Research (FoR) 2008:
Author(s)
Publication Date
2017
Socio-Economic Objective (SEO) 2008
Open Access
Yes
Abstract
Recent studies have shown that the bovine X chromosome contains more than a thousand genes, some of which may be economically important. However, since males are heterogametic for the X chromosome, it has, to date, largely been ignored for genomic prediction and its information content has not been fully explored. The genotyping quality of the X chromosome is the first question that must be addressed. In this study, we suggest a simple method to impute the X chromosome of the sire using a half-sib family in order to check genotyping accuracy. The results showed that the suggested method allows for a robust imputation of the X chromosome in ungenotyped sires and is useful for the routine quality control of the genomic data.
Publication Type
Conference Publication
Source of Publication
Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.22, p. 421-424
Publisher
Association for the Advancement of Animal Breeding and Genetics (AAABG)
Place of Publication
Armidale, Australia
ISSN
1328-3227
Fields of Research (FoR) 2020
Socio-Economic Objective (SEO) 2020
Peer Reviewed
Yes
HERDC Category Description
Peer Reviewed
Yes
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