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Title
Utility of Graphics Processing Units for Dense Matrix Calculations in Computing and Inverting Genomic Relationship Matrices
Fields of Research (FoR) 2008:
Author(s)
Publication Date
2013
Socio-Economic Objective (SEO) 2008
Abstract
The era of genomic evaluation has brought the need to perform computations involving large, dense matrices. Particular tasks are the computation and inversion of the genomic relationship matrix. This paper investigates the suitability of Graphics Processing Units together with highly optimised software libraries for these computations, using blocked algorithms. It is shown that calculations are readily sped up by parallel processing, using freely available library routines, and that reductions in time by factors of 4 to 5 are achievable even for 'consumer' grade graphics cards.
Publication Type
Conference Publication
Source of Publication
Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.20, p. 270-273
Publisher
Association for the Advancement of Animal Breeding and Genetics (AAABG)
Place of Publication
Armidale, Australia
ISSN
1328-3227
Fields of Research (FoR) 2020
Socio-Economic Objective (SEO) 2020
Peer Reviewed
Yes
HERDC Category Description
ISBN
9780473260569
Peer Reviewed
Yes
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