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Rahman, Muhammad
- PublicationExtracting pasture evapotranspiration parameters from proximal sensing and mathematical modelling - Dataset(University of New England, 2020-01-08)
; ; ; ; Knowledge of crop evapotranspiration is crucial for irrigation decision making. An appropriate, user-friendly and time-efficient means of inferring such information is therefore essential. In this study, a closed hemispherical chamber was instrumented, calibrated and deployed in the field for measuring actual evapotranspiration of a vital pasture species, Tall Fescue (Festuca arundinacea). The pasture crop coefficient (Kc) was calculated from the measured instantaneous evapotranspiration and reference crop evapotranspiration (ETo) for a range of growth stages. Also the relationship between Kc and Normalized Difference Vegetation Index (NDVI) as measured using an active optical sensor was established. Using the FAO dual crop coefficient approach and the hemispherical chamber, a technique for partitioning evapotranspiration components was developed. The components of evapotranspiration in terms of basal crop coefficient (Kcb) and soil evaporation coefficient (Ke) were expressed relative to canopy NDVI and Leaf Area Index (LAI). A theoretical model for estimating transpiration was also developed by scaling up stomatal conductance to canopy level in a controlled glasshouse environment. The model was validated against the measured transpiration. - PublicationExtracting Pasture Evapotranspiration Parameters from Proximal Sensing and Mathematical Modelling(University of New England, 2020-02-07)
; ; ;Mccarthy, Cheryl; Knowledge of crop evapotranspiration is crucial for irrigation decision making. An appropriate, user-friendly and time-efficient means of inferring such information is therefore essential. In this study, a closed hemispherical chamber was instrumented, calibrated and deployed in the field for measuring actual evapotranspiration of a vital pasture species, Tall Fescue (Festuca arundinacea). The pasture crop coefficient (Kc) was calculated from the measured instantaneous evapotranspiration and reference crop evapotranspiration (ETo) for a range of growth stages. Also the relationship between Kc and Normalized Difference Vegetation Index (NDVI) as measured using an active optical sensor was established. Using the FAO dual crop coefficient approach and the hemispherical chamber, a technique for partitioning evapotranspiration components was developed. The components of evapotranspiration in terms of basal crop coefficient (Kcb) and soil evaporation coefficient (Ke) were expressed relative to canopy NDVI and Leaf Area Index (LAI). A theoretical model for estimating transpiration was also developed by scaling up stomatal conductance to canopy level in a controlled glasshouse environment. The model was validated against the measured transpiration.
- PublicationExploring the Potential of High Resolution Satellite Imagery for Yield Prediction of Avocado and Mango Crops(MDPI AG, 2020-04-07)
; ; ; ;Walsh, KerryBristow, MilaAccurate pre-harvest yield estimation of high value fruit tree crops provides a range of benefits to industry and growers. Currently, yield estimation in Avocado (Persea americana) and Mango (Mangifera indica) orchards is undertaken by a visual count of a limited number of trees. However, this method is labour intensive and can be highly inaccurate if the sampled trees are not representative of the spatial variability occurring across the orchard. This study evaluated the accuracies of high resolution WorldView (WV) 2 and 3 satellite imagery and targeted field sampling for the pre-harvest prediction of yield. A stratified sampling technique was applied in each block to measure relevant yield parameters from eighteen sample trees representing high, medium and low vigour zones (6 from each) based on classified normalised difference vegetation index (NDVI) maps. For avocado crops, principal component analysis (PCA) and non-linear regression analysis were applied to 18 derived vegetation indices (VIs) to determine the index with the strongest relationship to the measured yield parameters. For mango, an integrated approach of geometric (tree crown area) and optical (spectral vegetation indices) data using artificial neural network (ANN) model produced more accurate predictions. The results demonstrate that accurate maps of yield variability and total orchard yield can be achieved from WV imagery and targeted sampling; whilst accurate maps of fruit size and the incidence of phytophthora can also be achieved in avocado. These outcomes offer improved forecasting than currently adopted practices and therefore offer great benefit to both the avocado and mango industries. - PublicationAssessing the potential of Sentinel-1 in retrieving mango phenology and investigating its relation to weather in Southern Ghana(International Society of Precision Agriculture (ISPA), 2022-06-29)
;Torgbor, Benjamin Adjah; ; The rise in global production of horticultural tree crops over the past few decades is driving technology-based innovation and research to promote productivity and efficiency. Although mango production is on the rise, application of the remote sensing technology is generally limited and the available study on retrieving mango phenology stages specifically, was focused on the application of optical data. We therefore sought to answer the questions; (1) can key phenology stages of mango be retrieved from radar (Sentinel-1) particularly due to the cloud related limitations of optical satellite remote sensing in the tropics? and (2) does weather have any effect on phenology? The study was conducted on a mango farm in the Yilo Krobo Municipal Area of Ghana. Time series analysis for radar vegetation index (RVI) values for 2018 – 2021 was used to retrieve three key phenology stages of mango namely; Start of Season (SoS), Peak of Season (PoS) and End of Season (EoS). Characteristic annual peaks (in April/May for the major season and October/November for the minor season) and troughs (in June/July for the major season and December/January for the minor season) in the phenology trend of mango were identified. Rainfall and temperature explained less than 2% and 14% of the variability respectively in mango phenology. The application of radar remote sensing provides a cutting edge technology in the assessment of mango phenology, particularly in the tropics where cloud cover is a big challenge. This study offers an opportunity for production efficiency in the mango value chain as understanding of the crop's phenology allows growers to manage farm and post-harvest operations.
- PublicationPotential of Time-Series Sentinel 2 Data for Monitoring Avocado Crop PhenologyThe ability to accurately and systematically monitor avocado crop phenology offers significant benefits for the optimization of farm management activities, improvement of crop productivity, yield estimation, and evaluation crops' resilience to extreme weather conditions and future climate change. In this study, Sentinel-2-derived enhanced vegetation indices (EVIs) from 2017 to 2021 were used to retrieve canopy reflectance information that coincided with crop phenological stages, such as flowering (F), vegetative growth (V), fruit maturity (M), and harvest (H), in commercial avocado orchards in Bundaberg, Queensland and Renmark, South Australia. Tukey's honestly significant difference (Tukey-HSD) test after one-way analysis of variance (ANOVA) with EVI metrics (EVImean and EVIslope) showed statistically significant differences between the four phenological stages. From a Pearson correlation analysis, a distinctive seasonal trend of EVIs was observed (R = 0.68 to 0.95 for Bundaberg and R = 0.8 to 0.96 for Renmark) in all 5 years, with the peak EVIs being observed at the M stage and the trough being observed at the F stage. However, a Tukey-HSD test showed significant variability in mean EVI values between seasons for both the Bundaberg and Renmark farms. The variability of the mean EVIs between the two farms was also evident with a p-value < 0.001. This novel study highlights the applicability of remote sensing for the monitoring of avocado phenological stages retrospectively and near-real time. This information not only supports the 'benchmarking' of seasonal orchard performance to identify potential impacts of seasonal weather variation and pest and disease incursions, but when seasonal growth profiles are aligned with the corresponding annual production, it can also be used to develop phenology-based yield prediction models.
- PublicationIntegrating Landsat-8 and Sentinel-2 Time Series Data for Yield Prediction of Sugarcane Crops at the Block LevelEarly prediction of sugarcane crop yield at the commercial block level (unit area of a single crop of the same variety, ratoon or planting date) offers significant benefit to growers, consultants, millers, policy makers, crop insurance companies and researchers. This current study explored a remote sensing based approach for predicting sugarcane yield at the block level by further developing a regionally specific Landsat time series model and including individual crop sowing (or previous seasons' harvest) date. For the Bundaberg growing region of Australia this extends over a five months period, from July to November. For this analysis, the sugarcane blocks were clustered into 10 groups based on their specific planting or ratoon commencement date within the specified five months period. These clustered or groups of blocks were named 'bins'. Cloud free (<20%) satellite data from the polar-orbiting Landsat-8 (launched 2013), Sentinel-2A (launched 2015) and Sentinel-2B (launched 2017) sensors were acquired over the cane growing region in Bundaberg (area of 32,983 ha), from the growing season starting in July 2014, with the average green normalised difference vegetation index (GNDVI) derived for each block. The number of images acquired for each season was defined by the number of cloud free acquisitions. Using the Simple Linear Machine Learning (ML) algorithm, the extracted Landsat derived GNDVI values for each of the blocks were converted to Sentinel GNDVI. The average GNDVI of each 'bin' was plotted and a quadratic model was fitted through the time series to identify the peak growth stage defined as the maximum GNDVI value. The model derived maximum GNDVI values for each of the bins were then regressed against the average actual yield (t·ha-1) achieved for the respective bin over the five growing years, producing strong correlations (R2 = 0.92 to 0.99). The quadratic curves developed for the different bins were shifted according to the specific planting or ratoon date of an individual block allowing for the peak GNDVI value of the block to be calculated, regressed against the actual block yield (t·ha-1) and the prediction of yield to be made. To validate the accuracies of the 10 time series algorithms representing each of the 10 bins, 592 individual blocks were selected from the Bundaberg region during the 2019 harvest season. The crops were clustered into the appropriate bins with the respective algorithm applied. From a Sentinel image acquired on the 5 May 2019, the prediction accuracies were encouraging (R2 = 0.87 and RMSE = 11.33 (t·ha-1)) when compared to actual harvested yield, as reported by the mill. The results presented in this paper demonstrate significant progress in the accurate prediction of sugarcane yield at the individual sugarcane block level using a remote sensing, time-series based approach.
- PublicationIntegrating Remote Sensing and Weather Variables for Yield Forecasting of Horticultural Tree Crops – A Case Study of Mango in Ghana and Australia(University of New England, 2024-03-08)
;Torgbor, Adjah Benjamin; ; ; Globally, the production and trade of fruits and nuts from horticultural tree crops (HTCs) is increasing due to greater demand from a growing world population. Among those HTCs, is the mango, venerated as the “king of fruits” due to its nutritional, health and the economic benefits it provides to both developed and developing nations. Its production and trade have consistently risen since the early 1960s, when official reporting begun. Global production increased from 10.9 million tons in 1961 to over 57 million tons in 2021, representing a 422% increase. According to the Food and Agricultural Organization of the United Nation (FAO), mango contributed USD 0.6 million to approximately USD 3.7 billion from 1961 to 2021 in export value to the global economy.
With increasing food demand, there is the need for increased production, optimizing efficiencies and minimizing environmental impact through the more judicious use of crop inputs. Part of this solution is the development of technologies and analytics that can more accurately and efficiently measure the spatial and temporal variability in tree health, timings of key phenological stages that dictate key management practices and production (yield and quality). The outcomes of these applications also assist with improved decision making around harvest planning and logistics, minimizing potential food wastage along the value chain, market access and forward selling. The current commercial practice for measuring these key parameters in tree crops, including mango, is predominantly by in-field within season assessment which is costly, time and labour intensive, can be inaccurate due to a nonrepresentative area of the orchard being evaluated and human subjectivity.
A review of prior literature identified some recent technological advancements such as the use of weather parameters ‘Growing Degree Days’ for determining tree growth phase and fruit maturation; proximal sensing/ machine vision and the targeted manual fruit counts of individual trees for calibrating remotely sensed imagery. However, these methods are costly, time and labour intensive. Additionally, the approaches can lack spatial granularity, scalability, commercial readiness and provide accuracies fairly similar to current commercial practices. From the publications reviewed across many horticulture and agricultural crops, remote sensing (RS) and associated cutting edge analytics (e.g. Machine learning (ML)) presents as the most likely technology to improve current management and forecasting practices in mango. However, a large knowledge gap still remains.
This study sought to address this knowledge gap by undertaking, four key objectives:
1. Assess the potential of Sentinel-2 satellite data derived vegetation indices (VIs) in distinguishing phenological stages of mango (Chapter 2)
2. Assess the potential of Sentinel-1 satellite data in distinguishing mango phenology and investigating its relationship with weather variables (Chapter 3)
3. Explore the relationship between very high-resolution satellite imagery data and fruit count for predicting mango yield at multiple scales (Chapter 4), and finally
4. Integrate time series remote sensing and weather variables for mango yield prediction using a machine learning approach (Chapter 5).
The study was conducted in commercial mango orchards in both Ghana and Australia covering the period 2015 to 2022 using RS data obtained from platforms such as Sentinel-1 (S1), Sentinel-2 (S2), Landsat-8 and WorldView-2 (WV2) and WorldView-3 (WV3) to derive VIs. A number of Statistical and ML approaches including Linear regression (LR), Random Forest (RF), Support Vector Regression (SVR), eXtreme Gradient Boosting (XGBOOST), Ridge, Least Absolute Shrinkage and Selection Operators (LASSO) and Partial Least Square (PLSR) regressions were employed at various stages throughout the study
Four publications were produced during the study, with the key findings of each publication presented as follows:
• The S2-derived Enhanced Vegetation Index (EVI) was identified as the index that best distinguished five phenological stages of mango (Flowering/Fruitset (F/FS), Fruit Development (FRD), Maturity/Harvesting (M/H), Flushing (FLU) and Dormancy (D)) of four mango farms in Ghana.
• S1-derived radar VI was identified to be responsive for distinguishing three phenological stages (Start of Season (SoS), Peak of Season (PoS) and End of Season (EoS)) from a mango farm in Ghana. These stages align well with three of the key phenological stages (F/FS, M/H and D) retrieved in the optical data (S2) experiment above. It was also established that although weather is known to influence growth and yield of HTCs, for the weather conditions of the study area, its influence on phenology was marginal.
• The evaluation of 24 WV3-derived VIs from individual tree canopies and associated fruit counts collected across many locations, seasons and cultivars (n = 1958), identified no consistent generic relationship between the predictor (24 VIs) and response (fruit count) variables at the individual orchard level. The subsequent modelling of all composite data through ML algorithms, identified the RF-based yield prediction accuracy was better at the farm level than the individual tree level with percentage root mean square error (PRMSE) of 10.1% and 26.5% respectively, for the combined model (i.e. a model trained on all cultivars, locations and seasons data). The potential of developing an ML-based yield variability map at the individual tree level to support precision agriculture was demonstrated.
• An RF-based time series model is capable of predicting block and farm level mango yield around 3 - 5 months ahead of the commencement of the commercial harvest season. The block level combined RS/weather-based RF model for 2021 produced the best result (mean absolute error (MAE) = 2.9 t/ha), marginally better than the RS only RF model (MAE = 3.4 t/ha). The farm level model error (FLEM) was generally lower than the block level model error, for both the combined RS/weather-based RF model (farm = 3.7%, block (NMAE) = 33.6% for 2021) and the RS-based model (farm = 4.3%, block = 38.4% for 2021). The errors thus, ranged from 3.7% to 82.7% and 28.7% to 70.7% at the farm and block levels respectively, for the RS/weather-based RF model across the 8-year time series. Factors such as irregular bearing and data associated limitations were possible causes of errors in the study. The study demonstrated the ability to improve yield prediction accuracy from a finer (e.g. block level) to coarser (e.g. farm level) scales as positive (overprediction) and negative (underprediction) errors tend to cancel out.
Overall, this study demonstrated the potential of integrating RS and weather variables for accurate mango yield prediction. Nevertheless, challenges including a lack of extensive farm level standardized data and the high cost of high-resolution imagery exist. Additionally, whilst these methodologies did demonstrate some benefit over existing practice, further validation of these methodologies is required over more growing locations, cultivars and seasons. This also includes the extrapolation of models at multiple scales, particularly regional and national levels (which were beyond the scope of this study). Furthermore, future research could explore the potential of this method to produce robust estimates in other perennial tree crops.
- PublicationIntegrating Remote Sensing and Weather Variables for Mango Yield Prediction Using a Machine Learning Approach(MDPI AG, 2023-06-02)
;Torgbor, Benjamin Adjah; ; ; Accurate pre-harvest yield forecasting of mango is essential to the industry as it supports better decision making around harvesting logistics and forward selling, thus optimizing productivity and reducing food waste. Current methods for yield forecasting such as manually counting 2–3% of the orchard can be accurate but are very time inefficient and labour intensive. More recent evaluations of technological solutions such as remote (satellite) and proximal (on ground) sensing have provided very encouraging results, but they still require infield in-season sampling for calibration, the technology comes at a significant cost, and commercial availability is limited, especially for vehicle-mounted sensors. This study presents the first evaluation of a ”time series”—based remote sensing method for yield forecasting of mango, a method that does not require infield fruit counts and utilizes freely available satellite imagery. Historic yield data from 2015 to 2022 were sourced from 51 individual orchard blocks from two farms (AH and MK) in the Northern Territory of Australia. Time series measures of the canopy reflectance properties of the blocks were obtained from Landsat 7 and 8 satellite data for the 2015–2022 growing seasons. From the imagery, the following vegetation indices (VIs) were derived: EVI, GNDVI, NDVI, and LSWI, whilst corresponding weather variables (rainfall (Prec), temperature (Tmin/Tmax), evapotranspiration (ETo), solar radiation (Rad), and vapor pressure deficit (vpd)) were also sourced from SILO data. To determine the relationships among weather and remotely sensed measures of canopy throughout the growing season and the yield achieved (at the block level and the farm level), six machine learning (ML) algorithms, namely random forest (RF), support vector regression (SVR), eXtreme gradient boosting (XGBOOST), RIDGE, LASSO and partial least square regression (PLSR), were trialed. The EVI/GNDVI and Prec/Tmin were found to be the best RS and weather predictors, respectively. The block-level combined RS/weather-based RF model for 2021 produced the best result (MAE = 2.9 t/ha), marginally better than the RS only RF model (MAE = 3.4 t/ha). The farm-level model error (FLEM) was generally lower than the block-level model error, for both the combined RS/weather-based RF model (farm = 3.7%, block (NMAE) = 33.6% for 2021) and the RS-based model (farm = 4.3%, block = 38.4% for 2021). Further testing of the RS/weather-based RF models over six additional orchards (other than AH and MK) produced errors ranging between 24% and 39% from 2016 to 2020. Although accuracies of prediction did vary at both the block level and the farm level, this preliminary study demonstrates the potential of a ”time series” RS method for predicting mango yields. The benefits to the mango industry are that it utilizes freely available imagery, requires no infield calibration, and provides predictions several months before the commercial harvest. Therefore, this outcome not only presents a more adoptable option for the industry, but also better supports automation and scalability in terms of block-, farm-, regional, and national level forecasting. - PublicationIntegrating Remote Sensing and Weather Variables for Yield Forecasting of Horticultural Tree Crops – A Case Study of Mango in Ghana and Australia - Dataset(University of New England, 2023)
; ; ; ; Torgbor, Adjah BenjaminExtracted time series satellite remote sensing (RS) data in an excel table with column names describing the content of the observations in rows. It also include figures and results tables from the analysis conducted in the research. The data excludes the actual yield data obtained from mango growers in the study locations of which sharing is not permitted. The satellite RS data was used in relation with the actual yield data to develop the time series yield models. - PublicationAssessing the Potential of Sentinel-2 Derived Vegetation Indices to Retrieve Phenological Stages of Mango in Ghana(MDPI AG, 2022)
;Torgbor, Benjamin Adjah; ; ; In 2020, mango (Mangifera indica) exports contributed over 40 million tons, worth around US$20 billion, to the global economy. Only 10% of this contribution was made from African countries including Ghana, largely due to lower investment in the sector and general paucity of research into the mango value chain, especially production, quality and volume. Considering the global economic importance of mango coupled with the gap in the use of the remote sensing technology in the sector, this study tested the hypothesis that phenological stages of mango can be retrieved from Sentinel-2 (S2) derived time series vegetation indices (VIs) data. The study was conducted on four mango farms in the Yilo Krobo Municipal Area of Ghana. Seasonal (temporal) growth curves using four VIs (NDVI, GNDVI, EVI and SAVI) for the period from 2017 to 2020 were derived for each of the selected orchards and then aligned with five known phenology stages: Flowering/Fruitset (F/FS), Fruit Development (FRD), Maturity/Harvesting (M/H), Flushing (FLU) and Dormancy (D). The significance of the variation "within" and "between" farms obtained from the VI metrics of the S2 data were tested using single-factor and two-factor analysis of variance (ANOVA). Furthermore, to identify which specific variable pairs (phenology stages) were significantly different, a Tukey honest significant difference (HSD) post-hoc test was conducted, following the results of the ANOVA. Whilst it was possible to differentiate the phenological stages using all the four VIs, EVI was found to be the best related with p < 0.05 for most of the studied farms. A distinct annual trend was identified with a peak in June/July and troughs in December/January. The derivation of remote sensing based 'time series' growth profiles for commercial mango orchards supports the 'benchmarking' of annual and seasonal orchard performance and therefore offers a near 'real time' technology for identifying significant variations resulting from pest and disease incursions and the potential impacts of seasonal weather variations.