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Brinkhoff, James
- PublicationModeling Mid-Season Rice Nitrogen Uptake Using Multispectral Satellite Data(MDPI AG, 2019-08-06)
; ;Dunn, Brian W; ;Dunn, Tina SDehaan, Remy LMid-season nitrogen (N) application in rice crops can maximize yield and profitability. This requires accurate and efficient methods of determining rice N uptake in order to prescribe optimal N amounts for topdressing. This study aims to determine the accuracy of using remotely sensed multispectral data from satellites to predict N uptake of rice at the panicle initiation (PI) growth stage, with a view to providing optimum variable-rate N topdressing prescriptions without needing physical sampling. Field experiments over 4 years, 4–6 N rates, 4 varieties and 2 sites were conducted, with at least 3 replicates of each plot. One WorldView satellite image for each year was acquired, close to the date of PI. Numerous single- and multi-variable models were investigated. Among single-variable models, the square of the NDRE vegetation index was shown to be a good predictor of N uptake (R² = 0.75, RMSE = 22.8 kg/ha for data pooled from all years and experiments). For multi-variable models, Lasso regularization was used to ensure an interpretable and compact model was chosen and to avoid over fitting. Combinations of remotely sensed reflectances and spectral indexes as well as variety, climate and management data as input variables for model training achieved R² < 0.9 and RMSE < 15 kg/ha for the pooled data set. The ability of remotely sensed data to predict N uptake in new seasons where no physical sample data has yet been obtained was tested. A methodology to extract models that generalize well to new seasons was developed, avoiding model overfitting. Lasso regularization selected four or less input variables, and yielded R² of better than 0.67 and RMSE better than 27.4 kg/ha over four test seasons that weren’t used to train the models. - PublicationAnalysis and forecasting of Australian rice yield using phenology-based aggregation of satellite and weather data(Elsevier BV, 2024-06-15)
; ;Clarke, Allister ;Dunn, Brian W ;Groat, MarkAgriFutures AustraliaRice yield depends on factors including variety, weather, field management, nutrient and water availability. We analyzed important drivers of yield variability at the field scale, and developed yield forecast models for crops in the temperate irrigated rice growing region of Australia. We fused a time-series of Sentinel1 and Sentinel-2 satellite remote sensing imagery, spatial weather data and field management information. Rice phenology was predicted using previously reported models. Higher yields were associated with early flowering, higher chlorophyll indices and higher temperatures around flowering. Successive rice cropping in the same field was associated with lower yield (p<0.001). After running a series of leave-one-year-out cross validation experiments, final models were trained using 2018–2022 data, and were applied to predicting the yield of 1580 fields (43,700 hectares) from an independent season with challenging conditions (2023). Models which aggregated remote sensing and weather time-series data to phenological periods provided more accurate predictions than models that aggregated these predictors to calendar periods. The accuracy of forecast models improved as the growing season progressed, reaching RMSE=1.6 t/ha and Lin’s concordance correlation coefficient (LCCC) of 0.67 30 days after flowering at the field level. Explainability was provided using the SHAP method, revealing the likely drivers of yield variability overall, and of individual fields.
- PublicationForecasting tree crop yield with limited data - a macadamia case study
Macadamia yield forecast models were trained with a large set of commercial yield data (10 years, 1,156 records). Predictors included remote sensing and weather data, aggregated spatially to macadamia block boundaries, and temporally to quarterly intervals. Errors were typically around 23% at the block level, and 10% at the region level. Much of the yield variability yield was predicted even for orchards excluded from training data. At least 400-500 training data points were needed to minimize error. Best results were obtained with a fusion of weather and remote sensing data, aggregated over 8 quarterly periods from 2 years before harvest.
- PublicationCharacterization of WiFi signal range for agricultural WSNs(Institute of Electrical and Electronics Engineers (IEEE), 2017-12)
; WiFi is starting to be adopted in agricultural settings because of the increasing use of data-centric farming devices and applications. Some of these applications require high data rates that other radio standards cannot offer, for example, realtime yield mapping, drone-based image upload and viewing and video monitoring. It is therefore desirable for farming wireless sensor networks (WSNs) to also utilise available on-farm WiFi networks. However, little information is available on WiFi signal propagation in these environments, as agricultural WSNs have traditionally been based on other radio standards. Therefore, the 2.4GHz WiFi signal propagation characteristics in real outdoor agricultural cropping environments were investigated using infield data loggers. Three distinct farming environments were studied, (i) bare fields, (ii) cotton fields, and (iii) ponded-water rice fields. We studied the effects of (i) weather conditions, (ii) crop growth and (iii) water depth on signal strength across an entire growing season. We also studied the range of reliable data transfer in each environment as a function of height of the logger WiFi antenna above the crop. Crop growth status was found to be much more significant in determining signal strength than weather conditions, with signal strength declining by 8dB over the season in a cotton field, and by 20dB in a rice field. In rice and cotton crops, provided the radios remain 20cm above the crop canopy, ranges in excess of 1km were measured. Significantly greater ranges are predicted if the antenna is more than 40cm above the top of the crop. Regression models were fitted to the measurements to allow predictions and recommendations, with correlation coefficient of determination (R2) values of better than 0.9 in most cases. Radio path loss exponents depended on the environment, and were typically between 3 and 5. - PublicationMultisensor Capacitance Probes for Simultaneously Monitoring Rice Field Soil-Water-Crop-Ambient ConditionsMultisensor capacitance probes (MCPs) have traditionally been used for soil moisture monitoring and irrigation scheduling. This paper presents a new application of these probes, namely the simultaneous monitoring of ponded water level, soil moisture, and temperature profile, conditions which are particularly important for rice crops in temperate growing regions and for rice grown with prolonged periods of drying. WiFi-based loggers are used to concurrently collect the data from the MCPs and ultrasonic distance sensors (giving an independent reading of water depth). Models are fit to MCP water depth vs volumetric water content (VWC) characteristics from laboratory measurements, variability from probe-to-probe is assessed, and the methodology is verified using measurements from a rice field throughout a growing season. The root-mean-squared error of the water depth calculated from MCP VWC over the rice growing season was 6.6 mm. MCPs are used to simultaneously monitor ponded water depth, soil moisture content when ponded water is drained, and temperatures in root, water, crop and ambient zones. The insulation effect of ponded water against cold-temperature effects is demonstrated with low and high water levels. The developed approach offers advantages in gaining the full soil-plant-atmosphere continuum in a single robust sensor.
- PublicationSatellite-based Real-time Monitoring of Peanut Fields Using Multispectral and Synthetic-aperture Radar ImageryPrevious studies have shown the utility of remotely-sensed multispectral imagery and vegetation indices derived from the imagery (such as Normalised Differential Vegetation Index - NDVI) for monitoring of peanut growth status. Applications include assessing within- and between-paddock biomass variability and predicting yield. This data is useful for growers managing in-field variability, and for processors managing operational logistics and financial forecasting. However, peanuts grown in Australia, and globally, are grown in areas where there is frequent cloud cover. This limits the applicability of satellite-based multispectral imagery for operational monitoring as the chance of a cloud-free capture on a required date are low. In contrast to multispectral imagery, synthetic-aperture radar (SAR) imagery is not limited by cloud cover. This paper assesses multiple uses of SAR imagery for peanut operations. A time-series of freely-available Sentinel-1 SAR images for the 2018-2019 season was obtained for this purpose, covering more than 50 peanut fields in the Bundaberg coastal cropping region located in south-eastern Queensland. The radar imagery was highly correlated with the limited cloud-free multispectral imagery from the Sentinel-2 platform over the same time period, with a significant correlation between multispectral NDVI and combinations of radar bands on multiple dates (r= 0.87) observed. Time-series growth profiles from the SAR data were also derived and assessment was made of their ability to estimate the crop emergence characteristics, actual harvest dates, and prediction of pod yield. Our results highlight the possibility for SAR data being used to replace multispectral data when the latter has limited availability due to presence of cloud cover on target peanut fields.
- PublicationEarly-Season forecasting of citrus block-yield using time series remote sensing and machine learning: A case study in Australian orchards
This study presents a comprehensive evaluation of seasonal, locational, and varietal variations in canopy reflectance responses in 315 commercial citrus blocks from three major growing regions in Australia. The dataset includes three different citrus types (Mandarin, Navel, Valencia) and 26 varieties. The aim is to utilize this combined information to better understand yield variation and develop improved forecasting models. Landsat satellite data spanning from October 2006 to February 2021 (1419 tiles) were used to derive reflectance values, and calculate four vegetation indices (NDVI, GNDVI, LSWI, and GCVI), for each citrus block. These indices were then analyzed alongside corresponding yield data, which consisted of 3660 individual yield records dating back to 2007. Two temporal resolutions were incorporated as predictors: spatio-temporal vegetation index time series (TS) aggregated every two months and annual time series of historical block-yield records. Six statistical and machine learning algorithms were calibrated using a leave-one-year-out cross-validation approach (LOYO CV) and validated for one-year forward prediction over a five-year period (2017–2021). The results highlight significant yield variations across years, alternate bearing patterns, and spatio-temporal changes in reflectance profiles influenced by seasonal conditions, varietal characteristics, and locations. The support vector machine (SVM) algorithm with a radial basis function kernel consistently outperformed other algorithms, indicating a non-linear relationship between citrus yield and predictors. The SVM model achieved an RMSE of 15.5 T ha−1 , R2 of 0.88, MAE of 12.1 T ha−1 , and MAPE of 29% in predicting block-yield across farms, varieties, and seasons. These prediction accuracy metrics demonstrate an improvement over current forecasting methods. Notably, the proposed approach utilizes freely available imagery, provides forecasts between two to nine months before harvest, and eliminates the need for infield counting of fruit load for image calibration. This approach provides an improved method for understanding seasonal yield variation and quantifying citrus block-yield, offering valuable insights for growers in harvest logistics, labor allocation, and resource management.
- PublicationEarly-Season Industry-Wide Rice Maps Using Sentinel-2 Time Series(Institute of Electrical and Electronics Engineers (IEEE), 2022-09-28)
; Agrifutures AustraliaRegional maps of rice fields provided early in each growing season facilitate production estimates, planning around harvest logistics, marketing and targeted agronomic recommendations. This work develops maps of all irrigated rice fields in New South Wales, Australia. Classification models were trained on reference maps from the 2019 and 2020 harvest seasons. Model predictions were tested against a reference rice map from the 2021 harvest season, covering 60,000 km 2 . The random forest algorithm was used, with features from aggregated time-series of Sentinel-2 imagery. A sequence of maps were generated at intervals of 15 days, from early to late in the growing season, with accuracy assessed at each time. The maps achieved 95% overall accuracy against point samples at 16 January 2021 ( ≈80 days after sowing). Pixel-based F1-scores against the reference map were above 80% for the 1, 16 and 31 January classified maps.
- PublicationRice ponding date detection in Australia using Sentinel-2 and Planet Fusion imageryRice is unique, in that yields are maximized when it is grown under ponded (or flooded) conditions. This however has implications for water use (an important consideration in water-scarce environments) and green-house gas emissions. This work aimed to provide precise predictions of the date when irrigated rice fields were ponded, on a per-field basis. Models were developed using Sentinel-2 data (with the advantage of inclusion of water-sensitive shortwave infrared bands) and Planet Fusion data (which provides daily, temporally consistent, cross-calibrated, gap-free data). Models were trained with data from both commercial farms and research sites in New South Wales, Australia, and over four growing seasons (harvest in 2018–2021). Predictions were tested on the 2022 harvest season, which included a variety of sowing and water management strategies. A time-series method was developed to provide models with features including satellite observations from before and after the date being classified (as ponded or non-ponded). Logistic regression models using time-series features produced mean absolute errors for ponding date prediction of 4.9 days using Sentinel-2 data, and 4.3 days using Planet Fusion data. The temporal frequency of the Planet Fusion data compensated for the lack of spectral bands relative to Sentinel-2.
- PublicationOlive Tree Water Stress Detection Using Daily Multispectral Imagery(Institute of Electrical and Electronics Engineers (IEEE), 2021-10-12)
; ;Schultz, Alex; Daily calibrated multispectral imagery (Planet Fusion) of an olive irrigation deficit trial was used to assess the degree and speed to which vegetation indices indicate water stress. We developed normalization techniques to increase sensitivity to differences across a grove. The normalized difference vegetation index (NDVI) was able to significantly detect differences between the control and deficit treatments for the Arbequina variety. For the Picual variety, the green red vegetation index (GRVI) was the best indicator. Though multispectral imagery is not as quick at indicating irrigation deficits as in-field sensor data, it is complementary in being able to capture the spatial variability of water stress.