Now showing 1 - 10 of 63
  • Publication
    Modeling Mid-Season Rice Nitrogen Uptake Using Multispectral Satellite Data
    (MDPI AG, 2019-08-06) ;
    Dunn, Brian W
    ;
    ;
    Dunn, Tina S
    ;
    Dehaan, Remy L
    Mid-season nitrogen (N) application in rice crops can maximize yield and profitability. This requires accurate and efficient methods of determining rice N uptake in order to prescribe optimal N amounts for topdressing. This study aims to determine the accuracy of using remotely sensed multispectral data from satellites to predict N uptake of rice at the panicle initiation (PI) growth stage, with a view to providing optimum variable-rate N topdressing prescriptions without needing physical sampling. Field experiments over 4 years, 4–6 N rates, 4 varieties and 2 sites were conducted, with at least 3 replicates of each plot. One WorldView satellite image for each year was acquired, close to the date of PI. Numerous single- and multi-variable models were investigated. Among single-variable models, the square of the NDRE vegetation index was shown to be a good predictor of N uptake (R² = 0.75, RMSE = 22.8 kg/ha for data pooled from all years and experiments). For multi-variable models, Lasso regularization was used to ensure an interpretable and compact model was chosen and to avoid over fitting. Combinations of remotely sensed reflectances and spectral indexes as well as variety, climate and management data as input variables for model training achieved R² < 0.9 and RMSE < 15 kg/ha for the pooled data set. The ability of remotely sensed data to predict N uptake in new seasons where no physical sample data has yet been obtained was tested. A methodology to extract models that generalize well to new seasons was developed, avoiding model overfitting. Lasso regularization selected four or less input variables, and yielded R² of better than 0.67 and RMSE better than 27.4 kg/ha over four test seasons that weren’t used to train the models.
  • Publication
    A Statistical Approach for identifying Important Climatic Influences on Sugarcane Yields
    (IHS Markit, 2016-01-13)
    Everingham, Y
    ;
    Sexton, J
    ;

    Interannual climate variability impacts sugarcane yields. Local climate data such as daily rainfall, temperature and radiation were used to describe yields collected from three locations-Victoria sugar mill (1951-1999), Bundaberg averaged across all mills (1951-2010) and Condong sugar mill (1965-2013). Three regression methods, which have their own inbuilt variable selection process were investigated. These methods were (i) stepwise regression, (ii) regression trees and (iii) random forests. Although there was evidence of overlap, the variables that were considered most important for explaining yields by the stepwise regressions were not always consistent with the variables considered most important by the regression trees. The stepwise regression models for Bundaberg and Condong delivered a model that was difficult to explain biophysically, whereas the regression trees offered a much more intuitive and simpler model that explained similar levels of variation in yields to the stepwise regression method. The random forest approach, which extends on the regression tree algorithm generated a variable importance list which overcomes model sensitivities caused by sampling variability, thereby making it easier to identify important variables that explain yield. The variable importance list for Victoria indicated that maximum temperature (February-April), radiation (January-March) and rainfall (July-October) were important predictors for explaining yields. For Bundaberg, emphasis clearly centred on rainfall, particularly for the period January to April. Interestingly, the random forest model did not rate rainfall highly as a predictor for Condong. Here the model favoured radiation (February to April), minimum temperature (March-April) and maximum temperature (January to April). Improved understanding of influential climate variables will help improve regional yield forecasts and decisions that rely on accurate and timely yield forecasts.

  • Publication
    Measuring Canopy Structure and Condition Using Multi-Spectral UAS Imagery in a Horticultural Environment
    (MDPI AG, 2019-01-30)
    Tu, Yu-Hsuan
    ;
    Johansen, Kasper
    ;
    Phinn, Stuart
    ;
    Tree condition, pruning and orchard management practices within intensive horticultural tree crop systems can be determined via measurements of tree structure. Multi-spectral imagery acquired from an unmanned aerial system (UAS) has been demonstrated as an accurate and efficient platform for measuring various tree structural attributes, but research in complex horticultural environments has been limited. This research established a methodology for accurately estimating tree crown height, extent, plant projective cover (PPC) and condition of avocado tree crops, from a UAS platform. Individual tree crowns were delineated using object-based image analysis. In comparison to field measured canopy heights, an image-derived canopy height model provided a coefficient of determination (R2) of 0.65 and relative root mean squared error of 6%. Tree crown length perpendicular to the hedgerow was accurately mapped. PPC was measured using spectral and textural image information and produced an R2 value of 0.62 against field data. A random forest classifier was applied to assign tree condition into four categories in accordance with industry standards, producing out-of-bag accuracies >96%. Our results demonstrate the potential of UAS-based mapping for the provision of information to support the horticulture industry and facilitate orchard-based assessment and management.
  • Publication
    An assessment of the potential of remote sensing based irrigation scheduling for sugarcane in Australia
    (Precision Agriculture Research Group (PARG), School of Science and Technology, University of New England, 2018) ; ;

    There is currently no operational method of managing irrigation in Australia's sugar industry on the basis of systematic, direct monitoring of sugar plant physiology. Satellite remote sensing systems, having come a long way in the past 10 years now offer the potential to apply the current ground-based 'FAO' or 'crop coefficient (Kc)' approach in a way that offers a synoptic view of crop water status across fields. In particular, multi-constellation satellite remote sensing, utilising a combination of freely available Landsat and Sentinel 2 imagery, supplemented by paid-for imagery from other existing satellite systems is capable of providing the necessary spatial resolution and spectral bands and revisit frequency. The significant correlations observed between Kc and spectral vegetation indices (VIs), such as the widely used normalised difference vegetation index (NDVI) in numerous other crops bodes well for the detection and quantification of the spatial difference in evapotranspiration (ETc) in sugar which is necessary for irrigation scheduling algorithms. Whilst the NDVI may not serve as the appropriate index for sugarcane, given the potential of the NDVI to saturate at the high leaf area index observed in fully developed cane canopies, other VIs such as the Green-NDVI (GNDVI) may provide the response required. In practise, with knowledge of an appropriate Kc-VI relationship, Kc obtained from time-series (weekly) remotely sensed data, integrated with local agrometeorological data to provide ETo, would provide estimates of ETc from which site-specific irrigated water requirements (IWR) could be estimated. The use of UAVs equipped with multispectral sensors, even active optical sensors (AOS), to 'fill the gaps' in optical data acquisition due to cloud cover is conceivable. Cross calibration of any passive imaging system, as with the multi-constellation satellite data is essential. The use of radar images (microwave remote sensing) (for example, Sentinel 1&2 C-SAR, 5m) offers all weather, day-and-night capabilities although further work is necessary to understand the link between the radar back scatter, which is responding to surface texture, and evapotranspiration (and Kc). Further R&D in ascertaining the Kc-VI relationships during crop growth is necessary, as is the testing of multi-sensor cross-calibration and the relationship between radar remote sensing and Kc. Existing irrigation advisory delivery systems in Australia such as IrriSAT should be investigated for their applicability to the sugar industry. The estimated season cost to a user for a sugarcane irrigation advisory service in Australia, based on the use of data from existing optical satellite imaging systems and utilising the Kc approach, is likely to be of the order of US$2-3/ha.

  • Publication
    Suitability of Airborne and Terrestrial Laser Scanning for Mapping Tree Crop Structural Metrics for Improved Orchard Management
    (MDPI AG, 2020)
    Wu, Dan
    ;
    Johansen, Kasper
    ;
    Phinn, Stuart
    ;

    Airborne Laser Scanning (ALS) and Terrestrial Laser Scanning (TLS) systems are useful tools for deriving horticultural tree structure estimates. However, there are limited studies to guide growers and agronomists on different applications of the two technologies for horticultural tree crops, despite the importance of measuring tree structure for pruning practices, yield forecasting, tree condition assessment, irrigation and fertilization optimization. Here, we evaluated ALS data against near coincident TLS data in avocado, macadamia and mango orchards to demonstrate and assess their accuracies and potential application for mapping crown area, fractional cover, maximum crown height, and crown volume. ALS and TLS measurements were similar for crown area, fractional cover and maximum crown height (coefficient of determination (R2 ) ≥ 0.94, relative root mean square error (rRMSE) ≤ 4.47%). Due to the limited ability of ALS data to measure lower branches and within crown structure, crown volume estimates from ALS and TLS data were less correlated (R 2 = 0.81, rRMSE = 42.66%) with the ALS data found to consistently underestimate crown volume. To illustrate the effects of different spatial resolution, capacity and coverage of ALS and TLS data, we also calculated leaf area, leaf area density and vertical leaf area profile from the TLS data, while canopy height, tree row dimensions and tree counts) at the orchard level were calculated from ALS data. Our results showed that ALS data have the ability to accurately measure horticultural crown structural parameters, which mainly rely on top of crown information, and measurements of hedgerow width, length and tree counts at the orchard scale is also achievable. While the use of TLS data to map crown structure can only cover a limited number of trees, the assessment of all crown strata is achievable, allowing measurements of crown volume, leaf area density and vertical leaf area profile to be derived for individual trees. This study provides information for growers and horticultural industries on the capacities and achievable mapping accuracies of standard ALS data for calculating crown structural attributes of horticultural tree crops.

  • Publication
    Avocado tree level survey and yield dataset
    (University of New England, 2019) ; ; ;
    Howlett, Brad
    Ensuring the sustainability of crop production, whilst simultaneously taking actions to mitigate the environmental impacts of agriculture, is a current global priority. Given around 75% of global food crop yields benefit from pollination services provided by diverse wild and managed insect taxa, management strategies that support diverse communities of pollinator taxa are valuable to ensure ongoing pollination service provisioning and agricultural production. In addition to pollination, realised crop yields are also influenced by other biotic and abiotic factors which vary across different spatial and temporal scales. This thesis addresses three important aspects of crop pollination, namely the need to merge disparate research fields, the degree to which pollinator taxa service multiple crops and regions and how pollination interacts with crop tree physiological factors such as tree vigour.
    First, I reviewed the literature to evaluate the knowledge gaps concerning pollinator effectiveness and the utility of using remote sensing in crop pollination research. I conducted surveys and pollen deposition trials to identify pollinators in avocado, mango and macadamia crops in three geographically distinct growing regions in Australia across three years. Using single visit deposition rates, bipartite networks and spatial analyses I also investigated pollinator service provisioning and the land use types that influence pollinator communities in these crop and regions. Using hand pollination trials over two years I investigated the impact of supplemental cross pollination on the yield of avocado trees.
    My first review identified important research directions to account for pollination processes occurring at a community level including: plant-pollinator interactions, heterospecific pollen transfer and variation in pollination outcomes. My second review identified the areas in which remote sensing technologies can facilitate our understanding of interactions between pollinators, pollination services, environmental and plant physiological factors which affect final harvest measures.
    Using multi-crop, multi-year and multi-region crop-pollinator networks I demonstrated that shared wild pollinator taxa visit multiple crops across several regions. In particular, honey bees (A. mellifera) and two families of wild visitors, Syrphidae and Calliphoridae, are present across all regions and crops. Further, regional comparisons for both avocado and mango crops identified additional shared families that were locally abundant such as Coccinellidae and native Apidae.
    I found that the effect of additional cross pollination on trees of different vigour varied between individual orchard blocks and across years. General patterns relating to the impact of interaction between tree vigour and pollination on yield were discernible in this study, with lower and medium vigour trees responding more positively to supplemental pollination than high vigour trees. High variability in results and differences in effect response across orchard blocks highlight the need to investigate further factors at a tree and block scale, in future analyses.
    My research indicates that there is significant potential to identify shared pollinators that provide services across multiple crops. Pollination management strategies that are regionally specific and that include bee and non-bee taxa and co-flowering crop species are needed to ensure ongoing effective and resilient pollination services are delivered to crop systems. The merging of different research fields, such as remote sensing, pollinator ecology and precision agriculture offers exciting new approaches to facilitate our understanding of these complex crop-pollinator interactions.
  • Publication
    Satellite-based Real-time Monitoring of Peanut Fields Using Multispectral and Synthetic-aperture Radar Imagery
    (American Peanut Research and Education Society, 2019) ;
    O'Connor, D J
    ;
    Previous studies have shown the utility of remotely-sensed multispectral imagery and vegetation indices derived from the imagery (such as Normalised Differential Vegetation Index - NDVI) for monitoring of peanut growth status. Applications include assessing within- and between-paddock biomass variability and predicting yield. This data is useful for growers managing in-field variability, and for processors managing operational logistics and financial forecasting. However, peanuts grown in Australia, and globally, are grown in areas where there is frequent cloud cover. This limits the applicability of satellite-based multispectral imagery for operational monitoring as the chance of a cloud-free capture on a required date are low. In contrast to multispectral imagery, synthetic-aperture radar (SAR) imagery is not limited by cloud cover. This paper assesses multiple uses of SAR imagery for peanut operations. A time-series of freely-available Sentinel-1 SAR images for the 2018-2019 season was obtained for this purpose, covering more than 50 peanut fields in the Bundaberg coastal cropping region located in south-eastern Queensland. The radar imagery was highly correlated with the limited cloud-free multispectral imagery from the Sentinel-2 platform over the same time period, with a significant correlation between multispectral NDVI and combinations of radar bands on multiple dates (r= 0.87) observed. Time-series growth profiles from the SAR data were also derived and assessment was made of their ability to estimate the crop emergence characteristics, actual harvest dates, and prediction of pod yield. Our results highlight the possibility for SAR data being used to replace multispectral data when the latter has limited availability due to presence of cloud cover on target peanut fields.
  • Publication
    Precision agriculture and sugarcane production – a case study from the Burdekin region of Australia
    (Burleigh Dodds Science Publishing Limited, 2017)
    Bramley, R G V
    ;
    Jensen, T A
    ;
    Webster, A J
    ;

    Chapter 9 builds on the themes of previous chapters, which focus on the deployment of technology in sugarcane cultivation, by addressing the issue of precision agriculture in sugarcane production through a detailed case study from the Burdekin region of Australia. Precision agriculture involves the use of spatial information about crop performance and the biophysical characteristics of the production system at the field and sub-field scales, in order to optimize agronomic management decisions. The chapter uses a 26.7 ha field in the Burdekin sugarcane growing region of Australia to illustrate how precision agriculture technologies might be used to enhance sugarcane production. In this case, precision agriculture achieved a saving of A$330/ha in gypsum application costs through the use of variable rate application.

  • Publication
    Early-Season forecasting of citrus block-yield using time series remote sensing and machine learning: A case study in Australian orchards

    This study presents a comprehensive evaluation of seasonal, locational, and varietal variations in canopy reflectance responses in 315 commercial citrus blocks from three major growing regions in Australia. The dataset includes three different citrus types (Mandarin, Navel, Valencia) and 26 varieties. The aim is to utilize this combined information to better understand yield variation and develop improved forecasting models. Landsat satellite data spanning from October 2006 to February 2021 (1419 tiles) were used to derive reflectance values, and calculate four vegetation indices (NDVI, GNDVI, LSWI, and GCVI), for each citrus block. These indices were then analyzed alongside corresponding yield data, which consisted of 3660 individual yield records dating back to 2007. Two temporal resolutions were incorporated as predictors: spatio-temporal vegetation index time series (TS) aggregated every two months and annual time series of historical block-yield records. Six statistical and machine learning algorithms were calibrated using a leave-one-year-out cross-validation approach (LOYO CV) and validated for one-year forward prediction over a five-year period (2017–2021). The results highlight significant yield variations across years, alternate bearing patterns, and spatio-temporal changes in reflectance profiles influenced by seasonal conditions, varietal characteristics, and locations. The support vector machine (SVM) algorithm with a radial basis function kernel consistently outperformed other algorithms, indicating a non-linear relationship between citrus yield and predictors. The SVM model achieved an RMSE of 15.5 T ha−1 , R2 of 0.88, MAE of 12.1 T ha−1 , and MAPE of 29% in predicting block-yield across farms, varieties, and seasons. These prediction accuracy metrics demonstrate an improvement over current forecasting methods. Notably, the proposed approach utilizes freely available imagery, provides forecasts between two to nine months before harvest, and eliminates the need for infield counting of fruit load for image calibration. This approach provides an improved method for understanding seasonal yield variation and quantifying citrus block-yield, offering valuable insights for growers in harvest logistics, labor allocation, and resource management.

  • Publication
    Evaluating satellite remote sensing as a method for measuring yield variability in Avocado and Macadamia tree crops
    (Society of Precision Agriculture Australia (SPAA), 2016) ; ; ; ;
    Simpson, Chad
    ;
    Searle, Chris
    Accurate yield forecasting in high value fruit tree crops provides vital management information to growers as well as supporting improved decision making, including postharvest handling, storage and forward selling. Current research evaluated the 8 spectral band WorldView 3 (WV-3) with a spatial resolution of 1.2 m, as a tool for exploring the relationship between individual tree canopy reflectance and a number of tree growth parameters, including yield. WV-3 imagery was captured on the 7th of April, 2016, over two Macadamia ('Macadamia integrifolia') and three Avocado ('Persea americana') orchards growing near the Queensland township of Bundaberg, Australia. Using the extent of each block, the WV-3 imagery was sub-setted and classified into 8 Normalised Difference Vegetation index (NDVI) classes. From these classes 6 replicate trees were selected to represent high, medium and low NDVI regions (n=18) and subsequently ground truthed for a number of yield parameters during April and May, 2016. The measured parameters were then correlated against 20 structural and pigment based vegetation indices derived from the 8 band spectral information corresponding to each individual tree canopy (12.6 m2). The results identified a positive relationship between derived vegetation indices (VI) and fruit weight (kg/tree) R2 > 0.69 for Macadamia and R2 > 0.68 for Avocado; and fruit number R2 > 0.6 for Macadamia and R2 > 0.61 for Avocado. The algorithm derived between the optimum VI and yield for each block was then applied across the entire block to derive a yield map. The results show that remote sensing of tree canopy condition can be used to measure yield parameters in Macadamia and Avocado grown in the Bundaberg region.